Medical Image Processing Group (MIPG)

Created by Yubing Tong, Jayaram K Udupa, and Drew A. Torigian at the University of Pennsylvania.

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Summary

The de-identified DICOM data sets in the table below are freely available to browse, download, and use for scientific, educational, or research purposes as part of a larger effort to share medical image data sets and associated object segmentations from among different body regions. Please be sure to acknowledge the data set(s) used and the MIPG in your publications by citing the references listed under the citations and data usage section at the bottom of each page corresponding to each specific data set utilized.

Body regions	Image types	Segmented structures	Number of segmented structures	Number of basic information about subjects	Data set size (MB)	Date of last update
Neck	Axial and sagittal T2-weighted MRI	adenoid tissue, pharynx (nasopharynx and oropharynx combined), nasopharyngeal airway, oropharyngeal airway, parapharyngeal fat pads, mandible, neck skin surface, palatine tonsils, left palatine tonsil, right palatine tonsil, tongue, soft palate	360	30 pediatric subjects (15 controls and 15 patients with obstructive sleep apnea)	426	Oct 23, 2020
Thorax	Axial CT	thoracic arterial system (including thoracic aorta and central pulmonary arteries), thoracic esophagus, mediastinum, left lung, right lung, pericardial region (including heart, epicardial fat, and pericardium), respiratory system (including lungs, trachea, and bronchi), thoracic spinal canal, stomach (portion in thoracic body region), trachea and bronchi, thoracic skeleton, thoracic skin surface, thoracic venous system (including brachiocephalic veins, superior vena cava, suprahepatic inferior vena cava, and azygos vein)	650	50 adult subjects with near-normal scans	836	Oct 23, 2020
Thorax	Sagittal T2-weighted dynamic MRI	lungs, left lung, right lung (each segmentation at end inspiration and end expiration as well as before and after surgery)	300	25 pediatric patients with thoracic insufficiency syndrome before and after surgical intervention	155	Oct 23, 2020
Abdomen	Axial CT	abdominal aorta, abdominal skeleton, abdominal skin surface, inferior vena cava, kidneys, left kidney, right kidney, liver, spleen	450	50 adult subjects with near-normal scans	578	Oct 23, 2020
Pelvis	Axial T2-weighted MRI	bladder wall	34	34 adult patients with bladder cancer	41	Oct 23, 2020
Torso	Axial low dose CT from PET/CT	thoracic skin surface, lungs, left lung, right lung, pericardial region (including heart, epicardial fat, and pericardium), abdominal skin surface, kidneys, left kidney, right kidney, liver, spleen, pelvic skin surface, bladder, pelvic fat	280	20 adult subjects with near-normal scans	722	Oct 23, 2020
Total	N/A	N/A	2074	234	N/A	N/A

For questions regarding these data sets, please contact:

Yubing Tong, PhD
Director of Operations
Senior Research Investigator
Medical Image Processing Group
Department of Radiology at the University of Pennsylvania
Goddard Laboratories Building - Sixth Floor (#601-W02)
3710 Hamilton Walk, Philadelphia, PA 19104-6021, United States
Email: yubing@pennmedicine.upenn.edu
Phone: 001-215-803-8866
Fax: 001-215-573-1811