Medical Image Processing Group (MIPG) DATA

Created by Yubing Tong, Jayaram K Udupa, and Drew A. Torigian at the University of Pennsylvania.

Summary

This data set includes axial CT images through the thorax in adult patients with near-normal scans, along with segmentations of thoracic arterial system (including thoracic aorta, branch vessels of aortic arch, and central pulmonary arteries) (T-AS), thoracic esophagus (T-Es), mediastinum (Med), lungs (BLg), left lung (LLg), right lung (RLg), pericardial region (including heart, epicardial fat, and pericardium) (PC), respiratory system (including lungs, trachea, and bronchi) (RS), thoracic spinal cord (T-SC), stomach (portion in thoracic body region) (Stmch),trachea and bronchi (TB), thoracic skeleton (TSk), thoracic skin surface (TSkn), thoracic venous system (including brachiocephalic veins, superior vena cava, suprahepatic inferior vena cava, and azygos vein) (T-VS).

Data set size (MB) = 889.
Number of studies = 50.
Number of images = 50.
Number of segmentations = 650.
Number of subjects = 50.

Acknowledgements

We would like to acknowledge the individuals and institutions that have provided data for this collection:
Drew A. Torigian, MD, MA. Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, United States.

Citations and Data usage

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1. Udupa JK, Odhner D, Zhao L, Tong Y, Matsumoto MM, Ciesielski KC, Falcao AX, Vaideeswaran P, Ciesielski V, Saboury B, Mohammadianrasanani S, Sin S, Arens R, Torigian DA. Body-wide hierarchical fuzzy modeling, recognition, and delineation of anatomy in medical images. Med Image Anal. 2014;18(5):752-71. doi: 10.1016/j.media.2014.04.003. PubMed PMID: 24835182; PMCID: PMC4086870.

2. Wu X, Udupa JK, Tong Y, Odhner D, Pednekar GV, Simone CB, 2nd, McLaughlin D, Apinorasethkul C, Apinorasethkul O, Lukens J, Mihailidis D, Shammo G, James P, Tiwari A, Wojtowicz L, Camaratta J, Torigian DA. AAR-RT - A system for auto-contouring organs at risk on CT images for radiation therapy planning: Principles, design, and large-scale evaluation on head-and-neck and thoracic cancer cases. Med Image Anal. 2019;54:45-62. doi: 10.1016/j.media.2019.01.008. PubMed PMID: 30831357; PMCID: PMC6499546.

For questions regarding this data set, please contact:

Yubing Tong, PhD
Director of Operations
Senior Research Investigator
Medical Image Processing Group
Department of Radiology at the University of Pennsylvania
Goddard Laboratories Building - Sixth Floor (#601-W02)
3710 Hamilton Walk, Philadelphia, PA 19104-6021, United States
Email: yubing@pennmedicine.upenn.edu
Phone: 001-215-803-8866
Fax: 001-215-573-1811