Medical Image Processing Group (MIPG) DATA

Created by Yubing Tong, Jayaram K Udupa, and Drew A. Torigian at the University of Pennsylvania.

Summary

This data set includes sagittal T2-weighted dynamic MR images through the thorax in healthy children obtained during end inspiration (EI) and end expiration (EE) along with segmentations of left/right lung, left/right hemi-diaphragm, left/right kidney, liver, spleen, skin and bilateral diaphragm .

Data set size (MB) = 626.
Number of studies =141.
Number of images = 282.
Number of segmentations = 2820.
Number of subjects = 141.

Acknowledgements

We would like to acknowledge the individuals and institutions that have provided data for this collection:
Patrick Cahill, MD, Wyss Campbell Center for Thoracic Insufficiency Syndrome, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, United States.
Drew A. Torigian, MD, MA. Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, United States.

Citations and Data usage

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Attribution should include references to the following citations:

1. Udupa JK, Tong Y, Capraro A, McDonough JM, Mayer OH, Ho S, Wileyto P, Torigian DA, Campbell RM, Jr. Understanding Respiratory Restrictions as a Function of the Scoliotic Spinal Curve in Thoracic Insufficiency Syndrome: A 4D Dynamic MR Imaging Study. J Pediatr Orthop. 2020;40(4):183-9. doi: 10.1097/BPO.0000000000001258. PubMed PMID: 32132448; PMCID: PMC6426694.

2. Tong Y, Udupa JK, McDonough JM, Wileyto EP, Capraro A, Wu C, Ho S, Galagedera N, Talwar D, Mayer OH, Torigian DA, Campbell RM. Quantitative Dynamic Thoracic MRI: Application to Thoracic Insufficiency Syndrome in Pediatric Patients. Radiology. 2019;292(1):206-13. doi: 10.1148/radiol.2019181731. PubMed PMID: 31112090; PMCID: PMC6614911.

3. Hao Y, Udupa JK, Tong Y, Wu C, Li H, McDonough JM, Lott C, Qiu C, Galagedera N, Anari JB, Torigian DA, Cahill PJ. OFx: A method of 4D image construction from free-breathing non-gated MRI slice acquisitions of the thorax via optical flux. Med Image Anal. 2021;72:102088. doi: 10.1016/j.media.2021.102088. PubMed PMID: 34052519; PMCID: PMC8316349.

For questions regarding this data set, please contact:

Yubing Tong, PhD
Director of Operations
Senior Research Investigator
Medical Image Processing Group
Department of Radiology at the University of Pennsylvania
Goddard Laboratories Building - Sixth Floor (#601-W02)
3710 Hamilton Walk, Philadelphia, PA 19104-6021, United States
Email: yubing@pennmedicine.upenn.edu
Phone: 001-215-803-8866
Fax: 001-215-573-1811